Protein Info for LRK53_RS14120 in Rhodanobacter sp000427505 FW510-R12

Annotation: septum site-determining protein MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 TIGR01968: septum site-determining protein MinD" amino acids 3 to 268 (266 residues), 362.2 bits, see alignment E=7.3e-113 PF10609: ParA" amino acids 3 to 247 (245 residues), 52.3 bits, see alignment E=2e-17 PF13614: AAA_31" amino acids 4 to 152 (149 residues), 60.7 bits, see alignment E=6.1e-20 PF09140: MipZ" amino acids 5 to 145 (141 residues), 37 bits, see alignment E=8.8e-13 PF01656: CbiA" amino acids 6 to 228 (223 residues), 70.6 bits, see alignment E=4.3e-23 PF02374: ArsA_ATPase" amino acids 6 to 41 (36 residues), 30.7 bits, see alignment 6.8e-11

Best Hits

Swiss-Prot: 72% identical to MIND_SHIFL: Septum site-determining protein MinD (minD) from Shigella flexneri

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 79% identity to psu:Psesu_2151)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>LRK53_RS14120 septum site-determining protein MinD (Rhodanobacter sp000427505 FW510-R12)
MTAEIIVVTSGKGGVGKTTTSASLATGLAMAGKKTAVIDFDVGLRNLDLIMGCERRVVYD
FVNVVHGEAALKQSLIKDKRYDNLYVLAASQTRDKDALTMEGVEKVLDGLSEEGFEYVVC
DSPAGIEKGAHLAMYFADHAVVVVNPEVSSVRDSDRILGLLASKTRRAEKGESPVTQHLL
LTRYNPARVAIGEMLSVKDVEEILGIEVVGVIPESENVLTASNNGIPVIVDAASQAGQAY
SDTVARILGEERPLRFIDVPKKGFLQRVFGG