Protein Info for LRK53_RS14065 in Rhodanobacter sp000427505 FW510-R12

Annotation: SCO family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00578: AhpC-TSA" amino acids 46 to 122 (77 residues), 33.1 bits, see alignment E=4.9e-12 PF02630: SCO1-SenC" amino acids 46 to 177 (132 residues), 143.2 bits, see alignment E=4.9e-46

Best Hits

KEGG orthology group: K07152, (no description) (inferred from 52% identity to bge:BC1002_2113)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>LRK53_RS14065 SCO family protein (Rhodanobacter sp000427505 FW510-R12)
MKPRHWLRPALLLLLLATGVLLGACHRGEPLPLRLTNISGHMPDLDFKLTDDNGKAVTGA
DYRGKVVLLYFGYTHCPDVCPLTLAQLHVVMQRLGPLADGARILFVSVDPARDTPAIMHG
YVNAFDKRSVGLVGDARSVEALSKRYRSAFTREPSSPDGSYEVSHSSAIYVFDRDGRARL
LATPSASQDDLVHDLHLLLDTGATS