Protein Info for LRK53_RS13420 in Rhodanobacter sp000427505 FW510-R12

Annotation: excinuclease ABC subunit UvrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 977 TIGR00630: excinuclease ABC subunit A" amino acids 4 to 925 (922 residues), 1451.4 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 130 to 237 (108 residues), 116.7 bits, see alignment E=1.1e-37 PF17755: UvrA_DNA-bind" amino acids 290 to 399 (110 residues), 126.8 bits, see alignment E=1.2e-40

Best Hits

Swiss-Prot: 72% identical to UVRA_ECO57: UvrABC system protein A (uvrA) from Escherichia coli O157:H7

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 70% identity to abo:ABO_0427)

MetaCyc: 72% identical to UvrABC excision nuclease subunit A (Escherichia coli K-12 substr. MG1655)
3.1.25.-

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (977 amino acids)

>LRK53_RS13420 excinuclease ABC subunit UvrA (Rhodanobacter sp000427505 FW510-R12)
MDTIRIRGARTHNLKNIDLDLPRDQLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSSY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGTPRC
PDHGTPLEAQTVSQMVDATLALDPEQRYMLLAPVIRERKGEHVQVFEQLRAQGFVRTRVD
GAVYDLDAVPPLGLRIKHTIEVVVDRFRPREDIKQRLAESFETALRLGDGLVILANMDVP
GAPEQMLSSRYSCPVCDYSLPELEPRLFSFNSPIGACPACDGLGVTQVFDPARVVGHPEL
SLASGAVRGWDRRNAHYFQLILSLAAHYGFDVDTPWNKLPADVQKAILYGSGKDRIAFRY
ITERGGKVTREHAFEGILPNLERRYKETESAAVREELAKYISDQPCPACEGQRLNRSARN
VFVADHALPALTHRSIDDALAFFEELKLTGWRGEIAVKIVKEIRERLTFLNDVGLNYLTL
DRQADSLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNT
VIVVEHDEDAIRMADHVLDIGPGAGVHGGEVVAQGTVQDMLDSPRSVTGQFLSGVRAIEV
PKERRQPIDDDSWLRLNGASGNNLKNVDLAIPAGLFTCVTGVSGSGKSTLVNDTLFRLAA
AELNGAGTQAAPYQSVQGLQLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLREMFAQVPE
ARARGYTPGRFSFNVRGGRCEACEGDGMLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLY
KGHTIADVLDMTVEDALKLFENVPTIARKLDTLRAVGLDYIKLGQSATTLSGGEAQRVKL
SKELSKRDTGNTLYILDEPTTGLHFHDIEQLLDVLHQLVDQGNTVVVIEHNLDVIKTADW
VVDLGPEGGAGGGRILVAGTPETVAATAESHTGHFLAPHLRPAKPKKPDAVTRIKAATKH
IASADKYKPMRGRKKSS