Protein Info for LRK53_RS13285 in Rhodanobacter sp000427505 FW510-R12

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 transmembrane" amino acids 60 to 79 (20 residues), see Phobius details PF07660: STN" amino acids 115 to 166 (52 residues), 36.7 bits, see alignment 4.3e-13 PF07715: Plug" amino acids 206 to 322 (117 residues), 65 bits, see alignment E=1.3e-21 PF00593: TonB_dep_Rec_b-barrel" amino acids 431 to 885 (455 residues), 104.2 bits, see alignment E=2.3e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (923 amino acids)

>LRK53_RS13285 TonB-dependent receptor (Rhodanobacter sp000427505 FW510-R12)
MLKDKGTVVADPTKGMNWVCALELAGRGAKVMPHGRSSREAVLQTTGMVRTRQIPLRSFR
IMLVRGTLAAVLAPLLPLYTATAQVAPTADAARNFDLPAGKLATALDALRTQSGLQVDYP
SALVVGKQGRAVHGRMNWREALTQLLEESGLEYEMLDSRTVAIRRAAGQARAADSTVTTS
SATHSVPAATNLESVQVTGTRIRGGSTPSPVITIGSEQIQQEGFTDLGQVIRSVPQNFNG
GQNPGVMGVASGLGDTTGGSALNLRGLGADASLTLLNGRRLAYDGYSQAVDISAIPAEAI
DRLEIVPDGASAIYGSDAVGGVANVIMKSDFDGVTVRARYGNATEGGLATREYTATAGTT
WAGGGLIATFKGADVDPIYARQRSYTKYLIDPYTIYPGSESHSGLMIVHQSLGDVAELRL
DALRTKRAVTQYLGTSTDSYYRYNPETSITLVSPSIEFFLRHDWSITLGGTYGKDNTANE
DHFVSVAENSLSQSCYCNESRSWEVGAEGPLFPMGGGETRLAVGAGSRKNKFRVVSKVSG
SSYGGDQRAGFAYTELDFPFVSPSSGIAGVHRLEFSAAMRGEDYDSFGRVTTPKLGVIYD
PTSDFTLKASWGKSFKAPTLLQRYGNKYAYLFSASAVGASGSPTDATVLLSSGGNTTDLR
AERARTWTTSLALHPESLPGLDAELTWFDIDYTDRVVQPVAYQQALSNPAYVDFVDRSPT
REQIQELLATYGSNFYNYAGAPYDASKVVAIVRDQYVNAARQRIKGLDLSGSYRFDFGDG
RLTVRGSTSWLDSTQTTGAGQPEQKLAGTVFNPARLNGRVGAVWTSGGVSASGFVNYTGG
VTNGFAPMPEKTASFTTLDTTINYNTGERTGAFSGMTFELVVQNLLNRAPPLYTAAVATY
VPYDATNYSAIGRFVSVSISKHW