Protein Info for LRK53_RS13100 in Rhodanobacter sp000427505 FW510-R12

Annotation: AzlC family ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 46 to 70 (25 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 149 to 165 (17 residues), see Phobius details amino acids 172 to 188 (17 residues), see Phobius details amino acids 193 to 210 (18 residues), see Phobius details PF03591: AzlC" amino acids 7 to 143 (137 residues), 101.8 bits, see alignment E=2.2e-33

Best Hits

KEGG orthology group: None (inferred from 75% identity to art:Arth_0324)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>LRK53_RS13100 AzlC family ABC transporter permease (Rhodanobacter sp000427505 FW510-R12)
MKIGLSIAVATGLYGVSFGALGVASGLGVWQTVALSALMFTGGSQFAFIGVLAGGGAGSA
AFGAATLLGVRNAVYGMQLNRMLRPRGWRRLLAAQLTIDESAATAAGQLDPGEQRRGFWS
AGLGVFVLWNLFTLAGALLGDALGDPRRWGLDGAAVAAFLGLLWPRLRAREPVALAVVCA
LVTVLAMPRVPPGVPILLAALVAALWGWFSRGPADEGLEPDVDPVGFDGADTPPQEHR