Protein Info for LRK53_RS12550 in Rhodanobacter sp000427505 FW510-R12

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 transmembrane" amino acids 10 to 29 (20 residues), see Phobius details amino acids 35 to 67 (33 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details PF07681: DoxX" amino acids 9 to 88 (80 residues), 64.9 bits, see alignment E=4.2e-22

Best Hits

KEGG orthology group: None (inferred from 70% identity to rme:Rmet_1594)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>LRK53_RS12550 DoxX family protein (Rhodanobacter sp000427505 FW510-R12)
MQGSADLGKLVLRITLGVLILFHGVSKLIHGPGYVLGVVTGAGLPSFVAYGAYVGEVVAP
LLLLVGYWTRVGALIIVVNMLFAIGLVHMGQLATLADTGGWALELQGMFLGTALAIMLLG
AGRYSFGGSNGRWN