Protein Info for LRK53_RS12505 in Rhodanobacter sp000427505 FW510-R12

Annotation: IS1182 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 transmembrane" amino acids 349 to 368 (20 residues), see Phobius details PF05598: DUF772" amino acids 43 to 119 (77 residues), 32.5 bits, see alignment E=1e-11 PF01609: DDE_Tnp_1" amino acids 227 to 360 (134 residues), 53.7 bits, see alignment E=2.3e-18

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>LRK53_RS12505 IS1182 family transposase (Rhodanobacter sp000427505 FW510-R12)
MNTAVRDRLTQFHRHFQHELVPLVEADVGQRLTPAMEGLLRIWEQVEIERFVPSTRGRVG
RPRQERMALARAFVAKAVLGLTQTSDLVDRLNADALLRRLCGFDPRRRKPLNASLFSRAF
AAFAEQGLAARVHEWLIRRTLGGALIGHVSRDATAIEARERPRKTAAAPSPPPRKRGRPR
KDEVRPAKEPTRIERQHAGMSLPAMLADLPAACDVGAKRNSQGFATTWIGYKLHLDVADG
MIPISAVLTSASVHDSQVAIPLATITMQRVTHLYDLMDAAYDSTLIREHSRGLGHVPLID
HNPGRGEKIPFAPHQAQRFKERSTVERVNARLKDDFGARRINVRGSVKVMAHLMFAVLAL
TADQLLRWVT