Protein Info for LRK53_RS12410 in Rhodanobacter sp000427505 FW510-R12

Annotation: amidohydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF01979: Amidohydro_1" amino acids 109 to 277 (169 residues), 30.7 bits, see alignment E=2.1e-11 amino acids 415 to 479 (65 residues), 55.4 bits, see alignment E=6.1e-19 PF07969: Amidohydro_3" amino acids 421 to 464 (44 residues), 37.1 bits, see alignment 2.8e-13

Best Hits

KEGG orthology group: None (inferred from 54% identity to aca:ACP_1652)

Predicted SEED Role

"amidohydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (498 amino acids)

>LRK53_RS12410 amidohydrolase family protein (Rhodanobacter sp000427505 FW510-R12)
MPVQARRLAPVLAPPRTRRDALLVTALAGLCAVSSAWAQAPQLSARTLQYVKYAQPLIAI
THVRVIDGHGTPAREKQTVLLRDGLIAALGRHVKLPKGATVIDGSGHTLIPGLVGMHDHM
FYPAPKVNPEAKDAIYPEQASSFPKLYLAGGVTSIRTTGSTEPYTDLELKKAIDAGKIPG
PKMHTTGPYLEGKGSFTPQMHELADAADATETVNYWIGEGATSFKAYMHITRAELSAAIA
VAHAKHVQVTGHLCAIGFTEAVGLGIDDLEHGLPVDTEFSAGKQPDVCPDTKAALAQLAT
MRVDDPRIQQLIRTLVAKHVAITSTLPVFETFVPGRAPVDQRVLDAMLPETRVEYLASRE
RIAGMHDSPWPKVFKLEQDFEHAFVQQGGTLLAGLDPTGYGGVIAGYGDQREVELLVEAG
FTPLQAIQIATLNGARFMGEDQRIGSIEVGKAADLVLLDGNPAENIKDIEKVELVFKDGM
GYDPAKLVKAANGTVGLR