Protein Info for LRK53_RS12365 in Rhodanobacter sp000427505 FW510-R12

Annotation: patatin-like phospholipase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 43 to 60 (18 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details PF01734: Patatin" amino acids 18 to 185 (168 residues), 109.1 bits, see alignment E=1.6e-35

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 60% identity to bpy:Bphyt_5145)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (294 amino acids)

>LRK53_RS12365 patatin-like phospholipase family protein (Rhodanobacter sp000427505 FW510-R12)
MAEAKPTVGSAQRRTAFVLAGGGSLGAIEVGMLQALLDWGETPAFLVGASAGAINAAYFA
GDPTNTGARELERIWCALKRSDVLPFNLGSVFGLLRRRDHLVDSSGLRRLLERHLPYRQL
EDAALPVHLVASDMLNGQEVLLSAGAAVDAVLASAAIPGVYPPVRIGTRWLVDGGVTNNT
PISAAVGLGATRVIVLPTGFACALERAPPGAIARAMHALSLLVARQLVYDAERFAGTAVE
LRIVPSLCPLDVSPYDYSAAARLIARARSETRRWLEQGGLEQARIPPQLREHHD