Protein Info for LRK53_RS11420 in Rhodanobacter sp000427505 FW510-R12

Annotation: outer membrane protein assembly factor BamE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF04355: BamE" amino acids 31 to 100 (70 residues), 81.3 bits, see alignment E=1.8e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>LRK53_RS11420 outer membrane protein assembly factor BamE (Rhodanobacter sp000427505 FW510-R12)
MQKLISLLVFAMLALSVAGCHIVYKPDVQQGNLLDKKTVDQLKPGMTKHQVLVLLGTPSV
NTPFDQGRWDYVSTLSHRGGAMKVRTLTLTFNNDTLVRTEGNFFAQDAQQLINDSKKYSA
GYPANETQGDKSTSPNDKKNDGGFGQDGNPGGHDGH