Protein Info for LRK53_RS11340 in Rhodanobacter sp000427505 FW510-R12

Annotation: NADPH-dependent 2,4-dienoyl-CoA reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 672 PF00724: Oxidored_FMN" amino acids 5 to 329 (325 residues), 269.1 bits, see alignment E=2e-83 PF07992: Pyr_redox_2" amino acids 376 to 643 (268 residues), 86.5 bits, see alignment E=6.6e-28 PF00890: FAD_binding_2" amino acids 377 to 416 (40 residues), 25.1 bits, see alignment 3.1e-09 PF13450: NAD_binding_8" amino acids 379 to 421 (43 residues), 35.6 bits, see alignment 2.8e-12

Best Hits

Swiss-Prot: 59% identical to FADH_ECOLI: 2,4-dienoyl-CoA reductase (fadH) from Escherichia coli (strain K12)

KEGG orthology group: K00219, 2,4-dienoyl-CoA reductase (NADPH2) [EC: 1.3.1.34] (inferred from 70% identity to smt:Smal_0797)

MetaCyc: 59% identical to 2,4-dienoyl-CoA reductase (Escherichia coli K-12 substr. MG1655)
2,4-dienoyl-CoA reductase (NADPH). [EC: 1.3.1.34]

Predicted SEED Role

"2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)" (EC 1.3.1.34)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.3.1.34

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (672 amino acids)

>LRK53_RS11340 NADPH-dependent 2,4-dienoyl-CoA reductase (Rhodanobacter sp000427505 FW510-R12)
MNYPKLFAPLDLGHITLPNRILMGSMHTGLEDKARDYDKLAAYFAERARGGVGLMVTGGI
SPSIEGWLKPFGGRLTLPWHKPRHRKLTRAVRAEGGRICLQILHAGRYGYHPLSVAPSRI
KSPITPFTPRALSTRGVERTIGDFVRCARLAQDAGYDGVEVMGSEGYLINEFIAARTNQR
NDAWGGDAARRMRFPVEIVRRTREAVGRDFIIIYRLSMLDLVEGGQDWEEVASLARAVEA
AGASIINTGIGWHEARVPTIVTSVPRAGFAWVTQKLKGEVKIPLVATNRINMPDVAERIL
AEGEADMVSMARPLLADPAWANKAKAGRSERINTCIACNQACLDHVFQNKRASCLVNPRA
CHETELKIEASAARKRIAVVGAGPAGMACAATLGERGHAVTLIDQAGEIGGQFNYAKQIP
GKEEFHETLRYFRHRLQDVGVGVRLGQAADAASLRAGGYDEVVIATGITPRRVSFPGSDD
PRVLGYLDVLARHHPVGARVAIIGAGGIGFDMAEFLVEHAPSPTTDVVRWTREWGVDLQL
RQRGGLQPPHPEAPARQVWLLQRSEGRPGARLNKTTGWVHRATLKAKRVTMLGKVGYERF
DDQGLHITIDGKPQVLPVDHVVVCAGQEPNRSLADELISIGMKVHVIGGADVAAELDAKR
AIAQGTRVASEI