Protein Info for LRK53_RS10835 in Rhodanobacter sp000427505 FW510-R12

Annotation: Tn3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 997 transmembrane" amino acids 918 to 936 (19 residues), see Phobius details PF13700: DUF4158" amino acids 7 to 173 (167 residues), 151.2 bits, see alignment E=2.6e-48 PF01526: DDE_Tnp_Tn3" amino acids 583 to 972 (390 residues), 485.6 bits, see alignment E=9.6e-150

Best Hits

Swiss-Prot: 49% identical to TNP3_ECOLX: Transposase for transposon Tn3 (tnpA) from Escherichia coli

KEGG orthology group: None (inferred from 66% identity to psa:PST_3435)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (997 amino acids)

>LRK53_RS10835 Tn3 family transposase (Rhodanobacter sp000427505 FW510-R12)
MPVSYVTEGQRDNYGRYNGNPSSDELARYFHLDDADRTYIARKRGHANRLGIALQLTTLR
YLGTFLDDPLDLPALVLSTVARQLDITDTDPSLDDYRTGELRWDHQRDICRQYGFVEITE
PPIGFRLGRWLYALCWTGTERPSVLFERAMTWLLTHKVLLPGRSTLERFVARVKARVEEH
LWRRLGTRLLDRQRERLEQLLIVPAGSRYSLLDQLRSGPTRVSGPALIQTLMRLREVREL
GIDLPRVSHLPASRVMALARFAGAAKASAVSRLPDVRRLATLVAFVHCLEATAHDDAVEV
LEMLLRDVFSTARKEDRKTRLRTLKDLDRAATLLADACQVVLDSTLPDKKLRKALFAKVP
RDVLAQALQEVSNLVRPPDDVFYSELSERYRRIRRFLPFVLENLRFGASPAGEAVVAAYE
WLRSHPGRFKADDDVPRDVIRKRWQRYAIRDDDSIDHRAYTFCVLDELHTSLRRRDVFVA
PSWKYADPRAGLLSGNEWETARPIICRTLSLSPTPSSALVAITKELDETYRAVASRLPDN
PAVRFEGENDLVVSSLDKLEEPASLLALRAAVNERLPRVDIEEVLLEIAARTGFTDAFTH
LTERSARAAELPISLCAVLLAEASNTGFEPLVRADIAALKRSRLSWVDQNYLRNDTLVAA
NAILVAAQNRSILAHQWGGGDVASADGMRFVVPVRTVHAAANPKYFGRERGVTWYNLISD
QFSGLNHITVPGTLRDSLILLGVVLEQPTELQPTQIMTDTGAYSDVVFGLFRLLGYRFCP
RLADVGGTRFWRIDPEADYGDLNAVARQRVKLPLIEEQWDDILRLVGSLKLGRVPANGIM
RTLQIGDRPTRLAQALAEFGRIEKTLHTLTYIDDEAKRRSTLTQLNRGEGRHSVARAIFH
GKRGELRQRYQEGQEDQLGALGLVLNIVVLWNTIYMEAALDQLRQDGFPVRDEDVARLSP
LSHDHINMHGRYSFAVPEAVARGELRPLRDPNDREGD