Protein Info for LRK53_RS10600 in Rhodanobacter sp000427505 FW510-R12

Annotation: DUF1302 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF06980: DUF1302" amino acids 5 to 605 (601 residues), 491.1 bits, see alignment E=2.8e-151

Best Hits

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>LRK53_RS10600 DUF1302 domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MFTLTAYAAALAFAGYMPCASATKFDLGNDVSGSLDTTLSYGALWRTQGPSPGLISIASG
GTSRDPNVGIGDLNYKNGDMVNSISRIGEEFQLKYKSFTLFVRGDYFHDFQTAHDKNKFG
PQGRSALISRARLLDAFVSDNFTVSGHLVNVRVGRQVINWGESTFIQNGLNAINAVDVNS
LRQPGSELKDALLPNPAFSFSAGLTDNLSLSGFVLTSFHRVVLDPQGAFFSQTDALSDYG
QRVYLSFGREPGGGVNNATPSDNFITRAPDSRPSGWNQFGLAAHYTVPALNYAEFGLYYE
HLDSHIPYLSIVAQQNQATPGSGLIAGVVGVPVPGYDGTEHYFADYPGGINVFGASFNAS
LPLGVALQGEYTYRPRMPVQLAATELVLSGMELPSEIAPKFAAFPGGSIIHGYRRVKMHQ
FQFTLTKLLADPGLGASQLVVLGEFGADYLDLPNHLKFAGGGTTLPLLAPFYGPTGPLAA
LTAKGSLQTTGFTSRFSWGYRAIAQLQYLNLFHSINVTPNLAWSQDVTGNGPNFNQGSKA
VTLGVDFDYLNNWHAGIAYTNFLGGHTSNSGIDPIPTPGQSSYYNTGSNGLKDRDFISAT
ISYSF