Protein Info for LRK53_RS10160 in Rhodanobacter sp000427505 FW510-R12

Annotation: 2Fe-2S iron-sulfur cluster-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF00111: Fer2" amino acids 6 to 80 (75 residues), 65.4 bits, see alignment E=3.8e-22 PF13510: Fer2_4" amino acids 11 to 89 (79 residues), 28.6 bits, see alignment E=1.2e-10

Best Hits

Predicted SEED Role

"Phenol hydroxylase, FAD- and [2Fe-2S]-containing reductase component DmpP"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>LRK53_RS10160 2Fe-2S iron-sulfur cluster-binding protein (Rhodanobacter sp000427505 FW510-R12)
MAYQLTIEPLGQTVEVEQDQTILDACLRQGVWLPHACCHGLCGTCKVQVVQGEFEHGNAS
PFALMDFEREESQALACCATLHDDAVIEADVDEDPDALYLPLEDRQAEVVRIEDLTRGPA
EIRVKMGHTF