Protein Info for LRK53_RS09985 in Rhodanobacter sp000427505 FW510-R12

Annotation: peroxidase-related enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 TIGR01926: uncharacterized peroxidase-related enzyme" amino acids 10 to 175 (166 residues), 137.5 bits, see alignment E=4.2e-44 PF04636: PA26" amino acids 24 to 118 (95 residues), 33.4 bits, see alignment E=2.7e-12 PF02627: CMD" amino acids 45 to 105 (61 residues), 45.2 bits, see alignment E=7.6e-16 TIGR00778: alkylhydroperoxidase AhpD family core domain" amino acids 59 to 101 (43 residues), 39.2 bits, see alignment 3.9e-14

Best Hits

KEGG orthology group: None (inferred from 55% identity to srm:SRM_02981)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (185 amino acids)

>LRK53_RS09985 peroxidase-related enzyme (Rhodanobacter sp000427505 FW510-R12)
MGWISEIPDSEARGPLRDIYGTIKKQRGKVARILSVHSLDPDALQHHLDLYLHLMFSPGP
LSRREREAIAVVVSTANGCTYCVAHHLEALQRHEKDAAVLAAVRTAPDQLADLRLRAMLL
YARKLTAAPSTMDQAQVTALRTEGLTDGDILRINLVTAYFNFVNRIALGLGVEADSEEIT
GYADE