Protein Info for LRK53_RS08680 in Rhodanobacter sp000427505 FW510-R12

Annotation: bifunctional tetrahydrofolate synthase/dihydrofolate synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 TIGR01499: bifunctional protein FolC" amino acids 24 to 419 (396 residues), 304.8 bits, see alignment E=6.4e-95 PF08245: Mur_ligase_M" amino acids 46 to 219 (174 residues), 31.6 bits, see alignment E=1.6e-11 PF02875: Mur_ligase_C" amino acids 290 to 412 (123 residues), 64.2 bits, see alignment E=2.3e-21

Best Hits

Predicted SEED Role

"Dihydrofolate synthase (EC 6.3.2.12) @ Folylpolyglutamate synthase (EC 6.3.2.17)" (EC 6.3.2.12, EC 6.3.2.17)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.2.12 or 6.3.2.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>LRK53_RS08680 bifunctional tetrahydrofolate synthase/dihydrofolate synthase (Rhodanobacter sp000427505 FW510-R12)
MSRTLAEWLAYQERVNVHSIELGLDRVREVWRRMSAPAPAKRVITVGGTNGKGSTVALLE
AMLRAADLRVGAFTSPHLLEYNERVRIGGVDADDAALIASFERIEASRGSMPLTYFEFGA
LAALDLFARAALDVAVLEVGLGGRLDAVNIIDADVAVITTVDLDHMEWLGPDRDSIGHEK
AGIARAGRPAIVGELDPPAGLLDALAERGARVERAGIDFSIERHQDGWRWRHRDGSAMEL
PDPALAAPVQYANAAAAIAALHALDLEAFTPSSFFAAVSAGLHEVRVPARLQSIGGEPPV
IVDVGHNPQAARALAEWLDLQAPTRVHAVYGALADKDVAGVIGALGPHIGHWHLAGLDQA
TPRGMPVAALAAVLRQVLPQAPYDAHADVTAALAAARAVAQPNERILAFGSFFVASAVLA
ERIG