Protein Info for LRK53_RS08285 in Rhodanobacter sp000427505 FW510-R12

Annotation: transglycosylase SLT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01464: SLT
  • amino acids 196 to 297 (102 residues), 71 bits, E=6.3e-24
• PF01476: LysM
  • amino acids 448 to 491 (44 residues), 33 bits, 4.7e-12

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

• Ascorbate and aldarate metabolism
• Glycosaminoglycan degradation
• Nucleotide sugars metabolism
• Ubiquinone and menaquinone biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Protein Sequence (494 amino acids)

>LRK53_RS08285 transglycosylase SLT domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MLSRSVVRTLRLAALAVAISLLAACASTGSTRPTTPLDTLYGELDQASKGYETALQQSRE
GNLQASRLTLTRALDRLKEASARCGNTPGCDPQRFFSVFDHLLRLKDGDFGSGQDLDSDV
DPAQAALASGSTGAASLPQAQRSVTLLHGQKLSQLIAMNGPVKAALEMWLTQWRPQLMDA
WVNYQYLRYQMWPQYQKADLPEALLFGIMAKESGGKVHAVSRSGASGPLQFMYATGMRFG
LGSDSGFDLRFDPAASARANAEYINEQLRVFNDNLELALGAYNGGEGRMRRTVGDDTSVS
FYDPRVYDQLSQETRDYVPAVLAAAWLFQHPDSYNLRFPKVDGAPGTVTLKRPASLSELT
VCLGSAGGMGDGWFRTLRNLNPRLDPQVTQPAGTPLQLPKLLEKAYASRCVDGPWPILAG
DLHHAVVPVAAAPVEPAPPPAARGTSRYKVRRGDTLISIVRKLHCSSVQEVAEANGLKHH
YLSIGQTLKLPVCR