Protein Info for LRK53_RS08160 in Rhodanobacter sp000427505 FW510-R12

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 36 to 54 (19 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 122 to 139 (18 residues), see Phobius details amino acids 145 to 163 (19 residues), see Phobius details amino acids 175 to 195 (21 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 243 to 261 (19 residues), see Phobius details amino acids 267 to 286 (20 residues), see Phobius details PF00892: EamA" amino acids 14 to 136 (123 residues), 45.3 bits, see alignment E=5.6e-16 amino acids 145 to 281 (137 residues), 61.3 bits, see alignment E=6.3e-21

Best Hits

KEGG orthology group: None (inferred from 69% identity to xca:xccb100_1522)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>LRK53_RS08160 DMT family transporter (Rhodanobacter sp000427505 FW510-R12)
MQPVNQARLQIHFCVLLWGFTAILGKLITLPALPLVWWRMLLVVAALLLMPRVWRGLRAM
PARLIWAYAGIGVLVSLHWLTFYAAIKLSNASVGATCIALGPVFLAFIEPWIAKRRFDPR
ELLIGVAVVPGVVMVVGGVPHDMRAGIAVGVLSALFVAFFGSLNKRLVEHGDPLTVTFIE
LGTGTIFLTLIAPFIPHAGPAFMLPGAHDALLLLVLAFGCTLLPFTLALVALRHMSAFGT
QMVTNLEPVYAIVLAIVLLGEQRELDGWFYAGVAVILAAVFMHPLMNRRARSTRQPELLG
TTESHSLVD