Protein Info for LRK53_RS07935 in Rhodanobacter sp000427505 FW510-R12

Annotation: multidrug efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details amino acids 366 to 388 (23 residues), see Phobius details amino acids 394 to 413 (20 residues), see Phobius details amino acids 434 to 455 (22 residues), see Phobius details amino acids 470 to 497 (28 residues), see Phobius details amino acids 537 to 555 (19 residues), see Phobius details amino acids 896 to 916 (21 residues), see Phobius details amino acids 923 to 943 (21 residues), see Phobius details amino acids 949 to 974 (26 residues), see Phobius details amino acids 995 to 1016 (22 residues), see Phobius details amino acids 1026 to 1051 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 1 to 1053 (1053 residues), 1133.1 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 1 to 1066 (1066 residues), 1372.3 bits, see alignment E=0 PF03176: MMPL" amino acids 343 to 497 (155 residues), 31.2 bits, see alignment E=1.1e-11

Best Hits

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1082 amino acids)

>LRK53_RS07935 multidrug efflux RND transporter permease subunit (Rhodanobacter sp000427505 FW510-R12)
MPSFFIDRPIFAWVVAILIALGGVLSILNLGVESYPSVAPPSVVVNAVYPGASADTTEKN
VTQVIEQQLTGIDHLLYFSSSSSSSGRASITLTFENGTNPDIAQVQVQNKVSLATPRLPS
EVTKQGVVVAKANTGFLEVVALRSDNPAIDRARLNDIVASQVLDQIARVPGVGSTQQFGG
EYAMRIWLDPDKLQGYGLSASQALAAVTAQNVQFAAGSLGSDPAANGQGISVTVATEGRF
TTPEQFENIILRANNDGTTVKLGDVAWVSFGAGVYGFNTTYNGLPVAAFAIQLLPGANAL
DVATAVHGKMDELAGSFPQGVSWFTPYDSTTFVKVSVNEVVHTLIEAIVLVFLVMLIFLQ
NIRATIIPTLVIPVALLGTFIGMLLLGFTINQLTLFGMVLAIGIVVDDAIVVIENVERIM
TEDGLSPKEATKKAMGQITGAVVGITVVLIAVFVPSSFQPGAAGVIYKQFALTIAMSVAF
SAFLALSFTPALCASFLTPVHEEKKNFVFRWFNTAFGKITHTYTGHIGSAVRHAPRWVMV
FVLISVLTGFLYTRLPGSFLPEEDQGFALAVVQLPPGASLQRTNAVMRQILTVLKQDPAV
DGVVQIAGFSFLGMGENVGMSFIRLKPWGERGWAPDQKAAQEQHDKLVKEGKAKPIDLGV
TAAEFIQRANGAVQSVRDAQIFIVNVPTVQGLGQFGGFDMYLQDRGGTGRDALTAARNTL
LGAASQNPLLVGVRPNGLEDAPQLRLDVDRTQALSMGLSVGDIYNAISLMLAPVYVNDFS
YGGRVKRVIMQADSPHRMGPEAFQHIFTPSTRTNADGTPQMIPLSNVVQAKWQMASPSLV
RYNGYSAVEIVGSPAPGHASGEAMNIMQKIVSDDLPHGFGYDWTGQSYQEILSGNTAILL
MVLSVVIVFLCLTALYESWSIPVSVLLVVPLGILGAVVFTLLRGLPDDIYFKIGVITVMG
LAAKNAILIVEFAVIEQRQGRTLREAVVDAARLRLRPILMTSIAFIGGVFPLFVSTGAGA
NARHAIGTGVIGGMLFATFLGVLLIPVFYVVVRRLLGDKLDGHEHPAIQGPHTFDSDPRR
GQ