Protein Info for LRK53_RS07820 in Rhodanobacter sp000427505 FW510-R12

Annotation: pilus assembly protein PilY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 PF05567: T4P_PilY1" amino acids 649 to 984 (336 residues), 125.7 bits, see alignment E=1.2e-40

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1200 amino acids)

>LRK53_RS07820 pilus assembly protein PilY (Rhodanobacter sp000427505 FW510-R12)
MLDDSGSMRWDIMPDYGSLSDKSRDALVNSDVNGVYYNPTVKYTVPPQANGTPYPSATFD
AALTNGFDKSSPAVDLSTYRGAYDVYNTNYVGTLVQYSIAVADKGASSYAPASGCPADTA
ISGGAQPGYCAFNDTSNVPTVRFNFFATNGYFYVSRCKSISDVYTDSNNSCTPGHSFFTY
TTVNTGGGYTRHYVAKVAGDCTTAGLASDVCDETDAARQNVATWFSYYHTRILMARSGVM
SAFATIDPLFRVGFSSINGTNTAGMPTGAVTVGGKTIAAVQPFGDGSSGTQRASLWSWLT
GVTPFKGGTPLRLSLDAVGQYYKADQPWQTSASDTTELACRQSYTILTTDGFWNGGTPSS
IGNVDNTTKGPITGPNNQPFTYNPGLPYSDSQSDTLADVAMKYWINDLRPAVNEVPTSKE
DPAFWQHMVTFTLGLGFDPVYAKGGATVPVDQIFAWANGDSSQAISGFSWPVPGADKIEN
IADLAHAAVNGHGGFASAKTPDEFSAALKKALQRASDRVGTGASLAANSTQLKTGAFAYQ
ANYYTGNWKGDLKAIAVDPNNAMLALTPTWTAASKLPAAIDRKIYTYNPDVAPVAAVAFT
DPATLSSAERPALGVDATAQQNMINYLRGDSSKEMSAKNGIYRTRETPLGDIVNSQPVYA
GQPEANQFVGQVFTGSDTFGSYSATTRQGLIFVAANDGMLHAFNADTGAEVFAYLPAAVI
TSGLSNLSKPDYGSTSVPHQFFNDGELTIADVYFGSAWHTVAVGTTGRGTARAIYALDVT
NPASITLLWERSAGDGKANADSIGQMTGKPVIAQTDAVASNTTGDANWSVLIGNGYNSKN
GTAALLQFAVKDGTLSVHATDATTANGLAAPAVWMGDLSVGISTVAYAGDAQGRVWSFGL
NKATTRGGVTTYAPTPISTGTKLYTAMDAASGGNAQPITGGMLIGKNPLTQDLWVFFGTG
QYLNSSDLTTTTTQSWYGLIVSSATSGLAVDGTKARSSLVQRSIIAETPGTPEVLNADGT
VATAAIAPARAVTATPSSSDMAGKSGWYIDLLSPTSTTAPDGTVTYTPNQTQQGERIVTP
NQFQGNQLLATTRIPQAADLCNPSGRGWIMAVDPFTGTNPKSSFFDLNGDGQINQPADWI
VVGGKPVAAGGMGFSSLPNNPIFMGGSMLVSFDNGSATSIKTSGTSGTLQRVSWRELIAQ