Protein Info for LRK53_RS07610 in Rhodanobacter sp000427505 FW510-R12

Annotation: FtsX-like permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 275 to 297 (23 residues), see Phobius details amino acids 318 to 345 (28 residues), see Phobius details amino acids 357 to 379 (23 residues), see Phobius details PF02687: FtsX" amino acids 278 to 389 (112 residues), 36.1 bits, see alignment E=3e-13

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 66% identity to gbm:Gbem_1398)

Predicted SEED Role

"protein of unknown function DUF214"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (396 amino acids)

>LRK53_RS07610 FtsX-like permease family protein (Rhodanobacter sp000427505 FW510-R12)
MFRIALKMLAADRAKFVGLLFGIAFTSFLVTFAASYFCGFMTNGFALISENGATDVWVMD
PAVQSVEQTINMPASALDRVRSVDGVSRAVPLALGNADVRFANGQFQTFQVIGVDDASLA
GAPVVPGRNPDELRARAAVIVDAGGTSGKLETPALPQDQWPHDGAHLDVPTRELRSGDEL
LVNEHLVRVLGQSSTLPRFPPRPLLYTTLSNALLILPVEPHTLTFVMARTVAGASPPEVA
RRIEQRTGLRARTTADFKSDTVRWFLVNSEDVGDIAAMLMLAMTMGFGVTGIMLYMFTYE
HQSQYAVLKALGTPSGTLTAMVLAQTAMCALLGTGMGLGLCGIAGEVVVRLGFPFRMLWF
TPLAGLLGVVVVSVVAALISVRPVVKLQPAVVFAGR