Protein Info for LRK53_RS07425 in Rhodanobacter sp000427505 FW510-R12

Annotation: cytochrome c biogenesis protein CcsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 125 to 147 (23 residues), see Phobius details amino acids 173 to 196 (24 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 238 to 260 (23 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 42 to 260 (219 residues), 116.8 bits, see alignment E=5.7e-38

Best Hits

KEGG orthology group: None (inferred from 59% identity to psu:Psesu_0986)

Predicted SEED Role

"CcsA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>LRK53_RS07425 cytochrome c biogenesis protein CcsA (Rhodanobacter sp000427505 FW510-R12)
MTIHVLALFAIALYLAAAAGLARPLLGGGQPLNRLALALAGAAVLIHAGILLGMHRGALD
LHFFAALSLVAFVVSALTLLVNVSRPVAALGVIVFPLTAALLALDSFLAPPTLPQPMDWQ
IKLHVTVALLAFGVLSIAAVLAIMLALQERALRHRQLGRWLRALPPLTLTETLLFRLISA
GFVLLTLTLLTGVLFVDNLFGQHLAHKTVLSIGAWLVFGVLLYGRWRHGWRGTRAVNLTL
IGMAVLVLAFFGSKFVLELILHRTVP