Protein Info for LRK53_RS07405 in Rhodanobacter sp000427505 FW510-R12

Annotation: 30S ribosomal protein S18

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 76 TIGR00165: ribosomal protein bS18" amino acids 4 to 72 (69 residues), 120.2 bits, see alignment E=1.6e-39 PF01084: Ribosomal_S18" amino acids 17 to 68 (52 residues), 89.1 bits, see alignment E=7.9e-30

Best Hits

Swiss-Prot: 88% identical to RS18_XANC5: 30S ribosomal protein S18 (rpsR) from Xanthomonas campestris pv. vesicatoria (strain 85-10)

KEGG orthology group: K02963, small subunit ribosomal protein S18 (inferred from 88% identity to xcv:XCV1662)

MetaCyc: 78% identical to 30S ribosomal subunit protein S18 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (76 amino acids)

>LRK53_RS07405 30S ribosomal protein S18 (Rhodanobacter sp000427505 FW510-R12)
MSKFFRRRKFCRFTAENVKEIDYKDLNTLRQYVTENGKIVPSRITGTKARYQRQLATAIK
RARFLSLLPYTDNHDV