Protein Info for LRK53_RS07105 in Rhodanobacter sp000427505 FW510-R12

Annotation: RNA polymerase-associated protein RapA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 PF18339: Tudor_1_RapA" amino acids 2 to 51 (50 residues), 66.3 bits, see alignment 5.8e-22 PF18337: Tudor_RapA" amino acids 54 to 109 (56 residues), 32.5 bits, see alignment 2.4e-11 PF04851: ResIII" amino acids 159 to 310 (152 residues), 36.1 bits, see alignment E=1.9e-12 PF00176: SNF2-rel_dom" amino acids 164 to 341 (178 residues), 44.1 bits, see alignment E=4.6e-15 PF00271: Helicase_C" amino acids 465 to 574 (110 residues), 53.7 bits, see alignment E=6.9e-18 PF12137: RapA_C" amino acids 578 to 938 (361 residues), 296.6 bits, see alignment E=7.8e-92

Best Hits

Predicted SEED Role

"RNA polymerase associated protein RapA (EC 3.6.1.-)" (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>LRK53_RS07105 RNA polymerase-associated protein RapA (Rhodanobacter sp000427505 FW510-R12)
MFVPGQRWISSAEPELGLGTVLRVEGRGVQVLFAKAGVLRPYAVDSAPLLRAEFRAGQRV
AGKGIAFLVERVEIKDDLLIYRGEGRELHEGQLDDEQSVSQADDRLVGGRTDAVAQFELR
LEGLQRRAEARRSPMWGLGAARIGLVPHQLRVAGIASARRPPRVLLADEVGLGKTIEAGM
IIARQLATGRASRVLLLLPDTLVYQWFVEMLRRFNLSFAIYDEERCEALEQSGDAGNPFE
DEQLVIADFGFLESSPKYARQLLDAPWDLLVVDEAHHLAWSPEAASPRYTMVEQLAAAIP
GVILLTATPEQLGRSGHFARLRLLDPQRYGNLESYLAEADRYLALSKIADRLLDGQPLDD
AQRAALAEAFHGDAVLTARLAEPTRPDNARELLAALIDRHGTGRAMFRNNRAGVGGFPQR
RPEWHLLPANAVDDSTRQALLAEFHADIQQPPALIEVDYAADPRIDALVALLDAHPQDKF
LLICRSQAKVLALEEALRTKSGAGVARFHEGLSIVQRDRNAAYFAQPDGARLLLCSEIGS
EGRNFQFAHRLVLWDLPLDPDLLEQRIGRLDRIGQKHDIDIHILAVADSAQHVLARWYGE
GIDAFRLSPADGRELLRRYGEPLTRLADEHARGDDNRDQELDALLAETRASHEQLAVLIR
GGRDHLLELAASRDLHADELQQAFAREDRDSTRDAFVQRLLEAFGIHAEELGGQVLLLDP
QYLSTDALPGFAEGPQSVTFARAVALAREDLPLLRLDHPLVAGALDLALSGEQGNAAFMV
DDVLPPRTALLQAVFLLECVADRKLDAERFLPVLPIAVTVDTRLAERADFAPSEIALRKA
GDRNIEVARYRKFLGKLVPPMLERAEALAGARGQARIDEAVGLATTALDAELSRLRALRA
VNRSVSEAGIAAVAAERTSLLAALPQSRLRLDAVRFVVSADFLALR