Protein Info for LRK53_RS06545 in Rhodanobacter sp000427505 FW510-R12

Annotation: TIGR02099 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1312 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF13116: YhdP" amino acids 9 to 1268 (1260 residues), 740.4 bits, see alignment E=2.3e-226 TIGR02099: TIGR02099 family protein" amino acids 13 to 1274 (1262 residues), 769.3 bits, see alignment E=3.6e-235

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1312 amino acids)

>LRK53_RS06545 TIGR02099 family protein (Rhodanobacter sp000427505 FW510-R12)
MNALWQRRLHRFVRASGWVAGVLVILLAVTAALAQLLLPLLARHPDWVAAQLGARLQRPV
SFVSMEGRWTGSGPVFVMHGVSVGAAAGESGTALQLPEAKLQFDFGGWLLPSRHLLNLHV
RGLQLDLLRDASGWHVNGIGMAGGSARQPLSAGRLSADLWLEDLRVVVTDATLGEHYTLL
SKQLRLSHQGSQIRFGGVLRRDGVNAALRTTGRFRDDGSAGQVWVSVDGADLNPLLEGVD
LGGYTIEHGRGQLRAWLDWRNGQVSRSLTRFDLDTLAVTAPAGGKASVASLHGLAGVSRV
DDGYDVRWAGDDGSALALNLHQPGSDNASADLAARKLQLAPLLPWLALKPALSPALAQWL
GSGHPRGVLDQLALHWNQAQGLRSVELTFSSLGIDPVGKLPGVSSLRGKLRGDAEALSLE
LPAQATTLAFPHTFRQPFVLSNLAGTLAFWPQDGDWHIGVDALDFTGAGYAGQARGELVL
PAQGGAPFMELYAKLAHADVAAAKLFWPIDSMSPGTVAWLDRALVAGRLDQADVLLRGDL
HDWPFRHNEGRFEARAVISDLTLDYGKSWPRAEGVSAVANFIDNGMLVEADDGHALGVKA
ERAVALIPDFGEALLDLNVQGNGSGASLMEFVRRSPIGNREADTLAKLKLGGSGTFGFHL
ALPLREGLGEPRLDGVARLKDADLSAPEWKLQLDKLNGPLSFDLHGMRAGPLDAGFRGQP
STLQLAVAGANSDPVTVLSAQLRGSYRLAELVQDYPSLNWIGKLGNGRSTFDVGFAIAHV
PGRDALAQTLSVDSALDGIALELPAPLHKPAEARLPLHLSMNLPIEGSELRLGLGEAMRG
YLRLADGQRPLAGSLAFGNQMPTELPPRDLRIRGHAGRLDVTGWVQYVATGSGGGPGLES
LDVSTDRAEWFGRDLGALKLHATPQPDQLSVDVDGPAMLGNYSVPTRELDKRGVTARLKR
LYWPKDPGTEAASHPPQSVAGAAPPAAATPPLPASDPANTGINPAALPPFHGWVGDLRMG
DARLGEARLETWPTAEGMHIEQLRALSSRVQITGSGDWNGNASNSRTQMKISFAAEDLGA
MLGALGFDGLVNGGKTRDQLDASWPGAPSGLSLATMDGTLSIQVNDGRIPEAASPGVGRL
LGLVSLTELPRRLTLDFGDVFGKGLAFDSISGDFRLANGNAVTDNLSIIGPAASISVNGR
TGLRARDYDQQMVVVPRVGNSLPLVGAVVGGPVGAAAGFAVQGILGRGLNQAASARYRIT
GSWDNPVIILVEKRGSTAPAPATPPLLPGAKPAPTVVAPLPEAHPAAATSSP