Protein Info for LRK53_RS06115 in Rhodanobacter sp000427505 FW510-R12

Annotation: NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 60 to 77 (18 residues), see Phobius details amino acids 89 to 112 (24 residues), see Phobius details amino acids 146 to 167 (22 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 236 to 255 (20 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details PF02233: PNTB" amino acids 9 to 478 (470 residues), 587.5 bits, see alignment E=1.1e-180

Best Hits

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>LRK53_RS06115 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta (Rhodanobacter sp000427505 FW510-R12)
MSWLPTVIKACYFLAALLFILGLKRMSSPRTARGGIVWAGYGMLLAVLATFFLPDMHNRG
LIIAAVLIGVSAAWWTGRRVAMTAMPQMVALYNGMGGGAAAAIGAVELIGYARSSGLLHV
VPDTSPLRPEAWAVNGLPPTLSPTELALGVLGALIGAVSFSGSLVAFAKLQGWMDKRFVF
PGQRAVNLLLLAAAVVAGVLLATGHASPALIATFFALALLFGLMMTLPIGGADMPVVISL
YNAFTGLAVSFEGFVLGNEAMIIAGMVVGAAGTLLTQLMAKAMNRSIGNVLFGSFGAAGG
EAQAISGAQKPVDASDAAVMMAYAERVVIVPGYGLAVAQAQHKVWEFAQLLIKRGVKVKF
AIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFPATDVALVIGANDVVNPLAKTDP
ASPIYGMPILDVSAAKHVIVIKRGKGTGFAGIENALFYADNTRMLYGDGQAAVGELVAAL
KEIDA