Protein Info for LRK53_RS05870 in Rhodanobacter sp000427505 FW510-R12

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 67 (22 residues), see Phobius details amino acids 79 to 118 (40 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details PF00512: HisKA" amino acids 210 to 271 (62 residues), 38.6 bits, see alignment E=8.9e-14 PF02518: HATPase_c" amino acids 317 to 419 (103 residues), 55.7 bits, see alignment E=6.3e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>LRK53_RS05870 ATP-binding protein (Rhodanobacter sp000427505 FW510-R12)
MPHRSNQRIGPFALTRTLAWLRICAIAGQSSAVLVAAWWMQLAIPLLPLLLGIGLLAVFS
VFASWRLTQPWPLREWEAVGHIAFDTLVLGYLLYFTGGASNPFVTLLLVPIALSAAALSG
RAVLVVAALAGVAYASLFYRYVPLPLPMAIGSPSRFTLHVLGMGVNFVIMALLLSFFISR
LAHVLRLQQLEVQRVRERALRDEGILAIATQAAGAAHELNTPLSTMRTLLPELRREHADD
ETLTEDLALLEAQVDRCRTILREMVAFGKAQLSREPERLTVAAFIHGCVERFQLLRPEAE
LTLPPDEDAARIVLRTPPGLRHALLNLLNNAVDASAINHSNAVALRVSRDGDWLQLCVRD
HGPGFDTDGELTLLGRSHKQTGLGIGLALAEATAERLNGELVASNTAHGAEVCLRLPLAV
IAEK