Protein Info for LRK53_RS05305 in Rhodanobacter sp000427505 FW510-R12

Annotation: glycosyltransferase family 2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 266 to 284 (19 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 13 to 237 (225 residues), 71 bits, see alignment E=3.1e-23 PF00535: Glycos_transf_2" amino acids 16 to 135 (120 residues), 80.4 bits, see alignment E=3.1e-26 PF13506: Glyco_transf_21" amino acids 71 to 237 (167 residues), 34.8 bits, see alignment E=2.3e-12

Best Hits

Predicted SEED Role

"dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL" in subsystem dTDP-rhamnose synthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>LRK53_RS05305 glycosyltransferase family 2 protein (Rhodanobacter sp000427505 FW510-R12)
MSTPASQRSPFAPALSVVVVSADSGPSLRECVRSVLASTLALELILVDNDSHDGVPEAIE
RAHAHDPRLRLIYNSRNLGFGPAVNLAAKQAYGQALLILNPDCLLPQDDLQRLLDLLSGR
PGAGLVGAVVCDAEGHPDPASWRRDPLLWRALNSLFGRAGEKINIEREIPAEVVEAEAVS
GAVMLMPRALFQRLGGFDEGYFLHCEDLDLCRRVRNLGYQVLLAGDVRVQHGKGSSSRHR
PVFVSRHKHRGMWRWFRKHDPAARNPLVACVVWLGIWGHFLLQIPGQLLRRKARSE