Protein Info for LRK53_RS05285 in Rhodanobacter sp000427505 FW510-R12

Annotation: site-specific tyrosine recombinase XerD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 PF02899: Phage_int_SAM_1" amino acids 19 to 95 (77 residues), 50.5 bits, see alignment E=2e-17 TIGR02225: tyrosine recombinase XerD" amino acids 20 to 304 (285 residues), 344.1 bits, see alignment E=3.2e-107 PF00589: Phage_integrase" amino acids 119 to 291 (173 residues), 158.7 bits, see alignment E=1.3e-50

Best Hits

Swiss-Prot: 53% identical to XERD_PSEAE: Tyrosine recombinase XerD (xerD) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K04763, integrase/recombinase XerD (inferred from 56% identity to nhl:Nhal_0930)

Predicted SEED Role

"Tyrosine recombinase XerD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>LRK53_RS05285 site-specific tyrosine recombinase XerD (Rhodanobacter sp000427505 FW510-R12)
MKKDENRASIAEADRRDISTFVERVWSEDGLADRTLEAYRRDLEALALWLAARGRNLRTA
RREDISAYHGAQPAAVRSIARRQSAFRRYYAFLARSEPGFADPTLLIERPKLPRSLPKAL
AEREIEGLLTAPDTGTTLGLRDRAMLELMYASGLRVSELVELPLAALNPRQGVLRVTGKG
GKDRLVPVGEEALVRIGAYLTDARPALAKGRQPAALFLSRRGEGMTRQMFWTLVKRYALK
VGINPKRISPHVLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVAKEGLKRLHAQ
HHPRG