Protein Info for LRK53_RS05215 in Rhodanobacter sp000427505 FW510-R12

Annotation: VTT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 54 to 80 (27 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 208 to 225 (18 residues), see Phobius details PF09335: VTT_dom" amino acids 68 to 184 (117 residues), 55.2 bits, see alignment E=5.3e-19

Best Hits

KEGG orthology group: None (inferred from 32% identity to smd:Smed_0083)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>LRK53_RS05215 VTT domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MSRWRAALPLILLVLAGLLLFASGSLHQLAPQRLVAHQAELHAQIASHPWLTRLAYIGLL
TLTVATGIPGTIVVILAGGFAFGVVDATVFSSIGLTLGSLVLYLASRYAFGAGSRQPPAM
VARLRHGFERHPASYTLFLRFVPVAPFGLVTISLAWLRCPLWLFLGASWLGGTVSLIFET
SIGAGLGDAIATSHGGPLGIGLFLHREVLLPLGAIALLALLPLLLERLTRRRRQPSRHSD