Protein Info for LRK53_RS04790 in Rhodanobacter sp000427505 FW510-R12

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 45 to 67 (23 residues), see Phobius details amino acids 78 to 100 (23 residues), see Phobius details amino acids 102 to 102 (1 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 211 to 235 (25 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 275 to 294 (20 residues), see Phobius details amino acids 300 to 320 (21 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 366 to 383 (18 residues), see Phobius details PF07690: MFS_1" amino acids 16 to 351 (336 residues), 129.3 bits, see alignment E=1.7e-41 PF00083: Sugar_tr" amino acids 45 to 183 (139 residues), 33.7 bits, see alignment E=2e-12

Best Hits

KEGG orthology group: None (inferred from 40% identity to mmb:Mmol_2132)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>LRK53_RS04790 MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MSKLSSLELRSALTLACVISLRLFGLFLIMPVFSLYAKAMPDATGFMIGLALGVYGIGQV
LLQIPLGLLSDRIGRKPAITIGLVLFAIGGLIAAMSHTLAGIALGRAVQGMGAVAGAGIA
LAADLTAEENRSKAMGIIGVSIGLAFLLALILGPPLEAVAGLPGLFGATSILALVSLVLL
WLIVPTPVRARAPAAAGLGQVLAMLRDGRMLVLNGSVFFLHALLTASFVGLPLLLAETLH
LPVNRHWELYLPVMTVAAFVMGATMHHMREVAQSLRIVTVCVVAIGLALLGFALSGRHLA
AFGVAAAVFFSAFNLLEAALPSLVSRLAPEQLRGAAMGAYSTSQFIGAFVGGALGGLALG
RLGPNGVFVCAAALTLLWLPLVVSGARRITRRAATTQARLA