Protein Info for LRK53_RS04260 in Rhodanobacter sp000427505 FW510-R12

Annotation: DUF962 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details PF06127: Mpo1-like" amino acids 9 to 156 (148 residues), 73.7 bits, see alignment E=5.4e-25

Best Hits

KEGG orthology group: None (inferred from 52% identity to xcc:XCC0448)

Predicted SEED Role

"FIG01112621: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (163 amino acids)

>LRK53_RS04260 DUF962 domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MTTRAANQRSMQDWLDSYSGDHQNPTNRLFHWLCVPPIVWSVIALLWAIPVPAAFARPGA
WAVLVMVLAFYWYWKRSHRLAIALLIAFALLGLLTNFLYGRLGPTQLCWLAVGVFVVAWI
GQFIGHKFEGRKPSFLTDLAYLLIGPAWLMAKLLRKLGFKQVT