Protein Info for LRK53_RS04080 in Rhodanobacter sp000427505 FW510-R12

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 534 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 170 to 190 (21 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 226 to 249 (24 residues), see Phobius details amino acids 256 to 275 (20 residues), see Phobius details amino acids 338 to 361 (24 residues), see Phobius details amino acids 375 to 397 (23 residues), see Phobius details amino acids 406 to 426 (21 residues), see Phobius details amino acids 434 to 457 (24 residues), see Phobius details amino acids 469 to 489 (21 residues), see Phobius details amino acids 495 to 514 (20 residues), see Phobius details PF07690: MFS_1" amino acids 111 to 484 (374 residues), 111.6 bits, see alignment E=4e-36 PF00083: Sugar_tr" amino acids 138 to 466 (329 residues), 62.4 bits, see alignment E=3.9e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (534 amino acids)

>LRK53_RS04080 MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MRSRDLTFHHPVAFWLGCAMVIAGVLAHLPMLAMAAPMHFRLAGMPMDNLMLAGMALVPL
GVLLAGYGLMPRLQQMRRTLHPDREPLPFHAADHVPLNREHWKLVAVLTIALAVDVMKPA
TIGFVMPGLSAEYGISGATAGWLALSALTGTAVGSIVWGRLGDLFGRRATILLSALMFMG
TAICGAMPSFGWNLVMCFMMGAAAGGMLPITFTLMAETIPTRHRGWLLVALGGVGTSAGY
LLASGAAALFEPAWSWRSLWLLNLPTGALIILLNRYIPESPRFLALAGLEQQARAVLQRF
SGGVAPVAVTPAGDAAHAPSPAPARTGMRQLLRGRHAAISWGLMVCAVAWGLANFGFLLW
LPANLVTLGIDAQASAALLARSAIIALPGIGVVVWAYQRWSSIRSLVLFIALTALSLLFF
FAIALVNLRSTALTTAGTVALLLCISGVIATLIPYAAEIYPVHLRSTGAGLIAGGSKFGG
ILGALIGVAGLFEHFMLSALLLALPMALAGWMLARSGIETRGYGLEAIQQALSE