Protein Info for LRK53_RS03555 in Rhodanobacter sp000427505 FW510-R12

Annotation: amidohydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01979: Amidohydro_1" amino acids 94 to 440 (347 residues), 166.9 bits, see alignment E=7.8e-53 PF07969: Amidohydro_3" amino acids 239 to 424 (186 residues), 38.4 bits, see alignment E=1.2e-13

Best Hits

KEGG orthology group: None (inferred from 54% identity to hoh:Hoch_2334)

Predicted SEED Role

"Xaa-Pro dipeptidase family enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>LRK53_RS03555 amidohydrolase family protein (Rhodanobacter sp000427505 FW510-R12)
MSMPRLLLAVAVSCLPLAAGADAPARDDAGSQRINLIECARLLDPAAGRMLGQTTLVVED
GRIKEIHPGAIDIEPYRKAASSLSVARLPDATCMPGLIDSHTHLTMQFSRDSYSDKFRLN
PADHAIRGTVYAKRTLLAGFTTVRNLGDDDNASFALRNAINAGLVPGPHVFSAGKPVGST
GGHADPSNGFRWDLQGDPGPKDGIIDSPAEAWKAVRQHYKDGADLIKIMPSGGVLDESSS
SGNPQMTLEEIKAVVAAAHDDGFTVAAHAHGAEAIRRAVLGGVDSVEHGTFMDAPDMKLM
KEHGTWYVPTIVAGQYVMEKAKQGWYPPQVARKAEEVGPLILATAGKAYKAGVKIAFGTD
AGVYPHGDNAREFVYMVQAGMPPMFVLQAATTHAAELLHKSDQLGRIAVGRGADVIAVPG
NPLDDISVMQHVSFVMKDGVVYKQDGRPTVQ