Protein Info for LRK53_RS03260 in Rhodanobacter sp000427505 FW510-R12

Annotation: lysoplasmalogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 34 to 36 (3 residues), see Phobius details amino acids 43 to 63 (21 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 184 to 202 (19 residues), see Phobius details amino acids 210 to 228 (19 residues), see Phobius details PF07947: YhhN" amino acids 46 to 230 (185 residues), 144.9 bits, see alignment E=1.2e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>LRK53_RS03260 lysoplasmalogenase (Rhodanobacter sp000427505 FW510-R12)
MVAMVFRSPLPAGVRRLAFATAATATAAIVGALLVAGEAGHGWLWLHWIAKPLATALIFL
LAWQARPSPSPRYRRWILAGIAASLAGDVLLMLPGDLFVPGLVAFLVAHACFIAAFLADS
RFAAPAWPLAACLAYGAANLALLWSAIGASLRVPVIVYVAVLATMGGQAWARARTRRSDA
AAQLAARGALVFILSDSVLAWGRFRGPVPLASLWVLAAYYLALWWIACSVQGVPVEHEAA