Protein Info for LRK53_RS03245 in Rhodanobacter sp000427505 FW510-R12

Annotation: glycerophosphodiester phosphodiesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF03009: GDPD
  • amino acids 21 to 340 (320 residues), 148 bits, E=2.7e-47

Best Hits

KEGG orthology group: K01126, glycerophosphoryl diester phosphodiesterase [EC: 3.1.4.46] (inferred from 69% identity to xcc:XCC4234)

Predicted SEED Role

"Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (EC 3.1.4.46)

MetaCyc Pathways

• glycerophosphodiester degradation (1/2 steps found)
• phosphatidylcholine resynthesis via glycerophosphocholine (1/2 steps found)
• glycerol and glycerophosphodiester degradation (2/4 steps found)
• phospholipid remodeling (phosphatidylethanolamine, yeast) (2/4 steps found)
• anandamide biosynthesis I (3/12 steps found)

KEGG Metabolic Maps

• Glycerophospholipid metabolism

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.1.4.46

Protein Sequence (349 amino acids)

>LRK53_RS03245 glycerophosphodiester phosphodiesterase (Rhodanobacter sp000427505 FW510-R12)
MPLAVHANEKPLATKVLVIGHRGASALRPEHTLASYGKAIADGADFIEPDLVMTKDGVPV
ARHENEIGGTTDVAAHPEFAARKTTKTVDGQAVTGWFTEDFTLAELKTLRARERLPELRS
TQYDGAFQIPTLDEIIDFVAAESATRGRLIGIIPEIKHGTYFQRAGLPLEDRVLAILAAH
AYTRTAPVEIQSFEIANLRYLRGKLGNGHRNIRLLQLIDDADQRPYDVVAAGGRLTYGEM
CTPAGLRAIATYADAIGPNIRAIIPLAKDGTLGRPTPLVHDAHAAKLELHPYTFRPENQF
QARNFWQGSDPKAFNAAGSIAEIRAYLDAGIDAFFTDDPALGRKALDAR