Protein Info for LRK53_RS03150 in Rhodanobacter sp000427505 FW510-R12

Annotation: IS4 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 46 to 63 (18 residues), see Phobius details PF13006: Nterm_IS4" amino acids 11 to 102 (92 residues), 93.1 bits, see alignment E=1.1e-30 PF01609: DDE_Tnp_1" amino acids 121 to 300 (180 residues), 39.8 bits, see alignment E=4.3e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>LRK53_RS03150 IS4 family transposase (Rhodanobacter sp000427505 FW510-R12)
MCSVTRLSPEAFDRFGQLIPADWIEHALQATGTASLRRRRLPAERLIWLVIGLALFRNEP
VWHIVRQLGLALDSETRVAPAPSATVQGRQRLGEAPLAHLFDQISRAWCAAPLPATGLFQ
GLRLLAVDGVVWSAQDTAEHRDVFGGGHSQHGEGSWPQVRAVCLMDVHTHLIRAAAFGAY
TTGELSYAHDLRAATPDHSLTIFDRAYYSAALLWAWQQAGEQRHWLMRAKSSLRYEVIRP
LGEGDAWVRLPVSPQARRQHPHLPVFWEARLIICSSGRRYLTSLADPIRHPADQVAACYR
QLC