Protein Info for LRK53_RS02955 in Rhodanobacter sp000427505 FW510-R12

Annotation: autotransporter domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00657: Lipase_GDSL" amino acids 29 to 295 (267 residues), 59.8 bits, see alignment E=4.3e-20 PF03797: Autotransporter" amino acids 341 to 592 (252 residues), 158 bits, see alignment E=3.9e-50

Best Hits

Predicted SEED Role

"Phospholipase/lecithinase/hemolysin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (613 amino acids)

>LRK53_RS02955 autotransporter domain-containing protein (Rhodanobacter sp000427505 FW510-R12)
MLRPRHLAGAIATALLFSTAAAATDFSNVIVFGDSLSDNGNISLATAPGIQPPLRFTTNP
GTTTAENVASGLGFTLKPSAAGGTDFAWGGAGFVNNVAAVPTIPQQLQMYLGTTGGKADG
NALYQVWGGANDIFYLSGALTNPNAIAAGTASAAQAELGVLGALQAAGARYVVVYNLPDL
GKTPASAAGGAAAQAGASQLAVLYNGVLNSGLMQLSNNGLNIIPVNTFALLNEAVANPSA
YGFSNVTTPACSGSSIQCGPQGSGLPYSYAAGTNQTYLFADGVHPTTAAHAMLSQYVLSV
IRAPEQISLLGEAPLAASTAQNRVMREQMLTTGKDGDVRTFVNIDYAKQRFDASGHSPRT
NSDNFNFALGANFFAGEHVTAGIALGIGQHNADFSGGGGYKLQDISGLGYLGYHNGGGYV
GGYVNFGQSNFKNIERRMSIGAAQRTETGKTDGSHLGGGVTGGWWFDLSDKLQTGPFANL
DWQTVKVSGYSENGNDSSAMWFGRQQRDSLLATLGWRLRGQWQVNNLLMSPYVELAWNHD
SKADPRMVSAGLNSMNGTFALSGFNPDQSWGTATLGLSAQLTPSVQSWIGYSGRFSDNSQ
KYNSVNMGVRINL