Protein Info for LRK53_RS02820 in Rhodanobacter sp000427505 FW510-R12

Annotation: MtrB/PioB family outer membrane beta-barrel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 863 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF11854: MtrB_PioB" amino acids 108 to 859 (752 residues), 297.1 bits, see alignment E=1.5e-92

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (863 amino acids)

>LRK53_RS02820 MtrB/PioB family outer membrane beta-barrel protein (Rhodanobacter sp000427505 FW510-R12)
MTPKTLTMGLLAGLFGMQCAMAGDTSGTMRVGDTQYGSALDPTGWAPMLYSADPDGVSWL
HPGMLRTPTGALNPYPPLPDEDRPMRLDDWNYAGLLQLGYLHVGGDRNAEYFRQYADWKS
GAVLGLFALDFHNRRTGQYVELRGSRLSGDDQFYRLRAGRYGSYRVEGFYRDMPHTVSTS
AYPIWNGVGGTDLTLPAPLVAGASTPAQVAAASAAAPRRSIGMTRTRAGLGYEGLLYRDW
IGSASITNEKRTGTRLWGGSMFFNYPFPNNGGVLETVRPTDFRTTDINLSLRNVGKVWRF
LATYNGSFFRNHKDHLNYESPFRLWNVVGTPQVADIKNGQFSLEPDNDYHNLRLDLSREL
KWNGQFTVAGAWGTMRQDDALLAPTTCTGVGGVFIAPPVDYTFQCANWNTTDALSRKNAN
ARIDTGLVDARVSFHPTAAFGWHAGLRWYREDNKTRYLAYNPLTGQYGYIAENGSMGSVV
PSETGIFDPTNPLYRSINVTVRNNPFGYTDTLFELGGDWQFGRKSSLGVVYTFDHNRPKY
RERKRVDDQRIKFDWVSRDVIGATVRLSWEYAKRDGDRYNYDPFAQFLSESLPGFVEPVD
GLPAYTVADMRKYDLSDRTESKARAIITYPWGESATLSATFYGNRDRYDALIGRQSTRTT
GATVQWDWQPTPATTVNAYLGAETSRLGISNVGDADSRDNGKALGTPGQTNPNLGGPLYP
FANQWWELDRESNRNGGFSLSHDFGRVRADVRYDYNGSFGHVGYSYATIGALANRVPAAV
AAAAAGFPDNKYRSNTLDLGLNFTINRNVGVRLFGRYQTGAFSDWHYAGFDNKLSYDHRL
YIDKGGQLHYSVSLVGAMLNLKL