Protein Info for LRK53_RS02805 in Rhodanobacter sp000427505 FW510-R12

Annotation: TIGR03862 family flavoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 369 to 385 (17 residues), see Phobius details PF03486: HI0933_like" amino acids 1 to 383 (383 residues), 215 bits, see alignment E=1.2e-67 TIGR00275: flavoprotein, HI0933 family" amino acids 1 to 383 (383 residues), 279.8 bits, see alignment E=3.5e-87 TIGR03862: flavoprotein, TIGR03862 family" amino acids 10 to 387 (378 residues), 543.6 bits, see alignment E=2e-167 PF22780: HI0933_like_1st" amino acids 175 to 331 (157 residues), 84.4 bits, see alignment E=8.2e-28

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 65% identity to sml:Smlt1695)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>LRK53_RS02805 TIGR03862 family flavoprotein (Rhodanobacter sp000427505 FW510-R12)
MAAEAACAAGVAVDLYETKGSVGRKFLLAGKGGLNLTHGEPRARFVERYGARRDAVARWL
DAFDAEALRRWARGLGVETFVGSSGRVFPLDQKAAPLLRGWLHRLREAGVAFHMHHRWLG
WSDGALRFATPQGERTVAAEAAILALGGASWPQLGSDGAWVAPLEHAGIDIAPLQPANCG
FELAWSEHLASRFAGAPLKPVVAHWVDRHGVARSRQGEFVLSEYGIEGSLIYAIGAELRE
QLAERGEAVLKLDLVPGYDQSALAGRLAAPRGRHSIGDWLRRRAGLDAAKCALLFELTDK
PTLADPAALAARLKALPLHLRAPRPVAEAISTAGGVRLEAVDENLMLHERPGVFCAGEML
DWEAPTGGYLLTACFASGLLAGRAAARRLLGA