Protein Info for LRK53_RS01985 in Rhodanobacter sp000427505 FW510-R12

Annotation: DISARM system SNF2-like helicase DrmD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1072 PF00176: SNF2-rel_dom" amino acids 163 to 347 (185 residues), 44.3 bits, see alignment E=2e-15 PF00271: Helicase_C" amino acids 545 to 649 (105 residues), 62 bits, see alignment E=8.9e-21

Best Hits

KEGG orthology group: None (inferred from 90% identity to ajs:Ajs_2198)

Predicted SEED Role

"ATP-dependent RNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1072 amino acids)

>LRK53_RS01985 DISARM system SNF2-like helicase DrmD (Rhodanobacter sp000427505 FW510-R12)
MIDHMEITSDQKMAAYDARPEPGQLVEVRRRQWVVSEVNSSALDSSRLLGIGEVSANYSV
EKASAPLSNSQHLVSMSSIDEDGLGEELEVIWEIEPGAQVIERAGMPSITGQDDSDTLEA
FLDAVRWGAATNADRGFLQAPFRSGVSIEDFQLDPLVRAIDMARVNLLIADDVGLGKTIE
AGLVIQEMLLRHRVRTVLVICPASLQEKWRIEMLEKFGLDFCVVDTAYIKQLRRDRGIHV
NPWTSHPRLIASMDWAKSGEGLRAMRDVLPLLAGHPRKFDLLVVDEAHNIAPAAGAHYAL
ESQRTRFIRSISPHFQHRLFLTATPHNGYTESFTSLLELLDDQRFARNILPDEKQLSQVM
IRRLKSDLVDAEGKPLYAQRKLQALVIPYTDEERKIHQKLNDYCASREKDAEKAGSTFGT
SFINQLLKKRLFSSPAAFASTLEKHIASIANGARPKVQDAMAERILRKAILKVDEDYAND
QEVENAQSEAVEEASRHTQPLTPEQQLLLNDLRQWAQRAKNQTDSKARAIIEWLEANLRP
DGEWSDRRVILFTEYRTTHSWMHEILASHGFGGERLGLLHGGLTQEEREPIKAAFQASPK
DSPVRILLATDAASEGIDLQNHCNCLIHLEIPYNPNVMEQRNGRIDRHGQRENEVLIWHP
VDGGDKSREPVGGHGEDILRALRKLESMRADMGSVNPVIAPQMSGLIEGSLKDLDTRLAE
AKIAKARRFVRAERELKERVAKLHERLLATQRDFHLTPDHIQMAVKTGLALAGRPPLESV
TLAGAPEGSVFKIPSLSGSWLRCSEGLEHPFRKGFIRPITFDHAVAKGRDDVVLVHLNHR
LVQMCLRLLRAEVWAQDDVKKLHRVTVRTLPDGRIEGLAVVVISRLIITGGHHHRLHEEL
TVSGGYLRDQSFRREESVTRVQQWLDEAQSVSASDSLFDALRVRFDRAQPAILQSVDARS
KDRLKSLASTLQIRKQQEIDDIGAVLDELEKAIQSELKKDQQPEQFLLFTEDERTQLRRD
TSALEARLARIPAERVQEVEAIETRYGKLDDRTFPVAVVFLVPESVAKGGAV