Protein Info for LRK53_RS01055 in Rhodanobacter sp000427505 FW510-R12

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 842 PF07728: AAA_5" amino acids 612 to 697 (86 residues), 36.4 bits, see alignment E=5.1e-13

Best Hits

KEGG orthology group: None (inferred from 86% identity to xcb:XC_1380)

Predicted SEED Role

"Glycerate kinase (EC 2.7.1.31)" in subsystem Allantoin Utilization or D-galactarate, D-glucarate and D-glycerate catabolism or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Glycine and Serine Utilization or Photorespiration (oxidative C2 cycle) or Serine-glyoxylate cycle (EC 2.7.1.31)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.31

Use Curated BLAST to search for 2.7.1.31

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (842 amino acids)

>LRK53_RS01055 AAA family ATPase (Rhodanobacter sp000427505 FW510-R12)
MAFSTDDTLWCEFLQVWPLERLRDMTLAQYTTAGDKDCFIYWLEFRLIDYGSIAGGSAFK
FAIFSRKDTVAREGDTSLAYDDHYGWYRRFGSSPEEAFQAIRGHVVAVAEAARDGRLDEI
DSSPLGAAYRWKIAFHYQPLQNPSIPCVYVRKPLLHFLGLPASDSTTPQSELYRSLAKLR
LADESIFAFSERLWKDWVANTPFVVKLSEGAVKNGYLPVNLISAPFPETMYGGKTPDDIA
DTAHFRTDSGLEFDTDIRVSSPGSGRLRHRLGSYFKDIGAAAGDVITVTQDGNGTYLLSS
KVATHAVGPVAPVATTSTATSAKDCAAERPPLNQILFGPPGTGKTYQAIEKALEILDPSF
LFRLGDDEGDERRKTLKQRYDELAKEGLVQFVTFHQSFSYENFVEGLSASSDPDTRQIRY
DVEDGVFKELCESARTRLVRRSDDAPLDLSGRRIWKLSLGDSNTEGHIYEECMEKGLALM
GFGNNADFSQCQSREDIQKVFAASGDPLSLGDYPITAINTFVRQMKKGDLVVVSEGNLKF
RAIGEITGDYQLVARESDNYSQARTVRWLRAYKPALPYGALMENRFQQKTTYELHSGSIN
HDKLRALLKAENGAAGVDHPRVLIIDEINRGNVSRIFGELITLIEPSKRSGAAEALEVLL
PYSKNPFSVPDNVYLIGTMNTADRSLAGLDIALRRRFDFVEMPPRPDKLTGIKVAEIDMS
AVLETMNRRIEILLDRDHQLGHAYFMSLENSNDLSRLSSIFLKQIIPLLQEYFFEDWQRI
AWVLNDHRKDKGFRFVEPATYSMDSLFGNTGDVLPEAKAWRLDEEAFKKPQSYLGILGDG
KV