Protein Info for LRK53_RS00960 in Rhodanobacter sp000427505 FW510-R12

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1114 PF05593: RHS_repeat" amino acids 178 to 212 (35 residues), 35.5 bits, see alignment (E = 1.5e-12) amino acids 197 to 228 (32 residues), 24.3 bits, see alignment (E = 5.1e-09) amino acids 238 to 274 (37 residues), 40.3 bits, see alignment (E = 4.8e-14) amino acids 259 to 297 (39 residues), 29.1 bits, see alignment (E = 1.5e-10) amino acids 332 to 362 (31 residues), 24.6 bits, see alignment (E = 4.1e-09) amino acids 382 to 419 (38 residues), 28.2 bits, see alignment (E = 3e-10) amino acids 424 to 459 (36 residues), 26.1 bits, see alignment (E = 1.3e-09) TIGR01643: YD repeat (two copies)" amino acids 179 to 214 (36 residues), 18.6 bits, see alignment (E = 2.1e-07) amino acids 197 to 224 (28 residues), 16.7 bits, see alignment (E = 8.5e-07) amino acids 225 to 258 (34 residues), 23 bits, see alignment (E = 8.3e-09) amino acids 259 to 289 (31 residues), 18.6 bits, see alignment (E = 2e-07) amino acids 382 to 420 (39 residues), 22.2 bits, see alignment (E = 1.5e-08) PF25023: TEN_YD-shell" amino acids 182 to 285 (104 residues), 27.9 bits, see alignment E=1e-10 TIGR03696: RHS repeat-associated core domain" amino acids 857 to 933 (77 residues), 76.4 bits, see alignment 2e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1114 amino acids)

>LRK53_RS00960 hypothetical protein (Rhodanobacter sp000427505 FW510-R12)
MHASTVSAPCGSGCGQPNTAATFDSNGYVASTTDFNGNVTTMVHDANGLLDQQVDGSGSA
DQRTTNITWNTTLRVPLIRTVLDAKGNTVGKTAWVYNTVGQPLARCEIDPAQASSYTCAT
TGTPPAGVRRWTYSYCTAVDTTQCPIVGLLLSVDGPRTEVADVSTYAYYLADIATAHHGD
LQSVTDALGHTTSYLTYDGAGRVTSLRDANGVVTNLTYTPRGWLASRSVGGATTTLSYTA
YGAVASITDPDGITTRYAYDAAHRLTDITDAQGNVIHYTLDNAGNKTGEQIRTATGTVVH
SLSRTFNILGQLTAVVDGLNHAVFNAGTSGSYDGNGNLVQSTDALGIQRQQGFDALNRLQ
STIANYNGPDPATKNTQSVFAYDARDNLEGVGDPDGLSTTYDYDGLGNRTVLHSPDTGTS
SDTYDAAGNRLTHTDAKGIVSTSTYDANNRLISTGYTDTTLNVSYAYDEANAVTGCSASL
PIGRLTRVVEAGVTTVFCYDGRGNVIQKQQVTLSQTDTTRYAYTAGNRLSSVSTPDQTAI
SYAYDSDGRVSSVQVAPAGASVASPTVVSSINYLPFGPISSYTLGNGQVVTRTYDANYRL
TDLTSPALNLHFNRDALGNITALGNASGANPATETYSYDPLYRLTGIADNGAALESYTYS
PTGDRRSKTALGLATGAYLYTGGTHQLASINGIARANDANGNTTGSVIGGNTYGFGYNGR
NRLTMAQLNGATVGIYTYNAMGQRIGKVVTFLQATTERFAYNEAGQLIGEYETSSAALAK
GKGKHRGKYHHHAGTVATNNRDYVWLGDIPVVVIDNSINGSVTTSVVNYVHADGLGTPLA
VTDGAGTIIWSWPYVGNPFGEQAPTSTTGYVLNLRYPGQYFDAESNTVYNIHRTYEPSTG
RFLQSDPAGLAGGISTYAYVNNAPLDRVDPDGLRDIFVGGFGDATSGIVRSYYNNYHQNN
PDSAYYSWTDLNGILQDIANAKPGDPINLIGHSYGGDTAAKAAMQSCKKVNLLITIDPVS
RHSPDLNALAGKVGTWVDVDAEGNNVFQPSNFIAGIGGGWNDEPNGIADSYIQDNRVNHE
DFESMMNASGAGVNSPAQVLGGAPLANPPFLPRY