Protein Info for LRK53_RS00860 in Rhodanobacter sp000427505 FW510-R12

Annotation: serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 669 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF00089: Trypsin" amino acids 82 to 230 (149 residues), 21.4 bits, see alignment E=1.9e-08 PF13365: Trypsin_2" amino acids 83 to 220 (138 residues), 52.9 bits, see alignment E=7e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (669 amino acids)

>LRK53_RS00860 serine protease (Rhodanobacter sp000427505 FW510-R12)
MRTWCGGATRRLGMLVLLCGLGLAGMSTARAASLDPALLPKIQAATFEVVQAKPAVDPLS
YERPLPLELLPYQERTDKYYSIGTAFAIGHNRYVTAAHVLLAGVDSLWGPPQLRDAAGRV
YPIGKIEKFSLGKDFVVFSLAQPPAGDAALELDASPALNQVVYAVGNALGTGVVIRDGLY
TSDTPEQQDGAWKWMRFSAAASPGNSGGPLLGKDGKLIGVVLMKSANENLNYALPIREVL
DAPAGKAVMDTRVTYQIDLFDTVQNDRLKAQFALPVGLGDFYREYQARMDANSDTQLKAL
LAKESANLFPNGAGSARLLHQQTQLDGFPTLIVRGTDGEWRRAGGQAQRFALDGNGYVAT
GGVARNGLVRLRRPDGVAAATFYGDAKSRMDLLARTGMFQREVAGEKVKITSLGKPVRES
TRLDRWQRPWHVGVWTLPYANALVVAYTLPVPDGSVMLVRFTPPSHEYDSMLDLDEMSSF
VHVTYQGTLAQWKDFLAHPALQPAAFKNIHIGFDYDRRFSYASQRLRFAYPSAVQAIKPD
NLLWLGFRFFLDDGKPVWDVGDVNVWKDTASDDHNNVNVQRYVAPPPGLDDDLSSRWRKL
SAREYPYNGVARYENDLMKINVVVAPAAPAGQPSTVLYTAFYGTVGTQPQADMKGKLDLL
TKDMQVTEH