Protein Info for LRK53_RS00750 in Rhodanobacter sp000427505 FW510-R12

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1080 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details transmembrane" amino acids 357 to 376 (20 residues), see Phobius details amino acids 382 to 403 (22 residues), see Phobius details amino acids 409 to 430 (22 residues), see Phobius details amino acids 455 to 479 (25 residues), see Phobius details amino acids 488 to 510 (23 residues), see Phobius details amino acids 556 to 578 (23 residues), see Phobius details amino acids 915 to 932 (18 residues), see Phobius details amino acids 938 to 961 (24 residues), see Phobius details amino acids 967 to 990 (24 residues), see Phobius details amino acids 1015 to 1032 (18 residues), see Phobius details amino acids 1041 to 1064 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 22 to 1063 (1042 residues), 547.3 bits, see alignment E=6.4e-168 PF02355: SecD_SecF_C" amino acids 355 to 496 (142 residues), 25.2 bits, see alignment E=1e-09

Best Hits

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1080 amino acids)

>LRK53_RS00750 efflux RND transporter permease subunit (Rhodanobacter sp000427505 FW510-R12)
MNEPTRLGISGRIARAFQASQITPLLALAGLLLGIAAAIITPKEEDPQIEVTMANVLVPY
PGASVQSVENLVSFPLEQKVAEIKGVKHVYSMSRAGMAVVTVEFDVGVPRQQALVDLYNK
LYSNADWVPAGLGVGQPLVKPYGIDDVPMMAVTLWSDRPETTPEQLAKVAHTLETELKRV
PGTRDVYTIGAPERAVMVELDPAKLATHQLAVADLVRTLKAANVAVDAGSEIGGNRDLPV
KAGTLLMNADEVAQLVIGLADGRPLYLSDVARVEAGSNHVTRLASFGTPPGRAGPLAGLA
PAVTLAIAKKAGSNAHTIAGTIRERLDALRGVDIPAGVHATVTRDYGQTANDKADELLLH
LGLAALAVVLLVLLALGWREAVVVGTAVVVTLAVTLFASWAIGFTINRVSLFALIFSIGI
LVDDAIVVVENIHRHMARGDKSLLQAIPAAVDEVGGPTILATFTVIAALLPMAFVGGLMG
PYMRPIPINASVGMLISLAVAFVVTPWLAYQLLRRHAPAAGAAQHSRIDDFLQNLFTRVM
RPFLGHPKAARNRRRLFLGMSLLVLLAAGLAGVKLVVLKMLPFDNKSEFQVVLNMPEGST
LEQTQRVLVELGRVLDGVPEVKDYQLYAGTSAPMNFNGLVRQYYLRNQPYQGDIQVNLVD
KGERQRQSHQVALAVRPALAAVAQRFHAHLVVAEVPPGPPVIAPIVAEIYGPDYRDQRGV
VLALAQLFERTPGIVDVNLSTENPQATRQLVEIDRARAAALGISQADIVDALRTGMGGTP
ASYMADENAKYAVPIVLRLPPAALGSMDNVLKLRVRSAAGQLVPISEVVKVVTRPWADAV
YHKDLLPYAFVTGDDAGSEDSPVYGMFRLVGKIGQTRLDRQQLAQKFTAPPASDSGFSVR
WSGEWEITLETFRDMGIAYSMGLLLIYLLVVGQFRSYLVPLIIMAPIPLTVIGVMPGHWL
FGAQFTATSMIGMIALAGIIVRNSILLVDFINHSLAAGLSLENAVVEAGAVRAKPIILTA
LAAMLGAFFILGDPIFQGLAVSLVFGVLVSTVLTLLVIPLLYYGWLARDGGRHLPGRDAA