Protein Info for LRK53_RS00605 in Rhodanobacter sp000427505 FW510-R12

Annotation: cytochrome P450

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF00067: p450" amino acids 161 to 352 (192 residues), 67.4 bits, see alignment E=5.6e-23

Best Hits

KEGG orthology group: None (inferred from 78% identity to tmz:Tmz1t_0929)

Predicted SEED Role

"Cytochrome P450-type heme-thiolate monooxygenase, N-terminal"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>LRK53_RS00605 cytochrome P450 (Rhodanobacter sp000427505 FW510-R12)
MTDHMPEDLSAIGRDLRAYTDELRPWHGVVRNVQGDWVLLSHDLVLQAARDDQRFSSAVS
RHLHIPNGLDGAEHSAYRAALDRFLTPGALAPFRGAFHRAAVDVVALLPRGVAVDAVGGF
GSRFAVRAQSAWLGWPSDLEDRLVDWVAENHAATRLGDRSRTRQVAEAFDALIRDVLARR
RDVAPPDAAYDVTARLMRTEVDGWPLTDEEIVSVLRNWTGGDLGTIALCVGVLVHRLATQ
PAMQDRLRAGVSDVEFDAIVDEILRIDDPFVSNRCVTTCPVTIGGVELPQGARVKLNWTS
ANRDESVFGNPDAMDPQRNATYNLVYGIGRHACPGRPLATLELRIAMQALLAATSSITLA
PQSPAEREVAPVGGWARVPVMLA