Protein Info for LRK53_RS00315 in Rhodanobacter sp000427505 FW510-R12

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 60 (23 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 232 to 250 (19 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details amino acids 347 to 369 (23 residues), see Phobius details amino acids 389 to 411 (23 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 36 to 438 (403 residues), 427.6 bits, see alignment E=2.4e-132 PF00909: Ammonium_transp" amino acids 38 to 438 (401 residues), 393.1 bits, see alignment E=6.4e-122

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 75% identity to xcv:XCV0190)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>LRK53_RS00315 ammonium transporter (Rhodanobacter sp000427505 FW510-R12)
MKQFRFHRGVGASLALALTAPLLHAATPAPVVDKGDVAWMLTSTLLVLLMTVPGLALFYG
GLVRAKNVLSVLMQVLTVFSLLLLLWVVYGYSLAFSGGGAVIGNFHKLFLHGVTKDTLAA
TFSAGVALPEYVFVAFQATFAGITGALIVGALAERMRFRAVLLFTAIWFTFAYLPIAHMV
WAGPSGFLFARGALDFAGGTVVHINAGVAGLVGAWLVGPRLGFGREPMKPHNVTFTMVGA
ALLWVGWFGFNAGSNLEANAGAGLAFINTLLAAAAAVLTWLAVEAAMRGHASMVGGASGA
VAGLVGITPACGTVGPMGAIVIGAMASLCCVWGVTRLKKLLRADDALDVFGVHGVGGIVG
ALLTGVFTAPGLGGTGATNYSVIRQLGVQALGVGITVLWSGVVSVLGYLVVKLVFGLRVP
YEAEREGLDITSHGESAYDG