Protein Info for LRK53_RS00210 in Rhodanobacter sp000427505 FW510-R12

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 53 to 74 (22 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 131 (24 residues), see Phobius details amino acids 141 to 164 (24 residues), see Phobius details amino acids 170 to 192 (23 residues), see Phobius details amino acids 238 to 262 (25 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 304 to 321 (18 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 391 to 411 (21 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 338 (318 residues), 121.2 bits, see alignment E=2.4e-39

Best Hits

KEGG orthology group: None (inferred from 70% identity to axy:AXYL_04116)

Predicted SEED Role

"putative membrane transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>LRK53_RS00210 MFS transporter (Rhodanobacter sp000427505 FW510-R12)
MTIQRSRPFGQNYAFVVLAVVFLALLVSAGMRGTPGVLMLPLGRAFGWSRDSISTAAAVG
ILLYGLMGPFAAALMQRFGIRRVLLIALSVMALAAAGSAAMTRPWQLLLSWGVLSGAGTG
CVAVVLGATVVGRWFSSHRGLVMGLLTASTATGTLIFLPGLAAIAEYAGWRAVVLTIAAC
CLALLPLVLWLLPERPADIGLVRYGAGPDEPADAGTTSGNLFALTLGALRRASRRGAFWY
LFATFFVCGFTTNGLIGTHFIALCGDHGIPEVRAAGLLAMMGIFDLFGTTASGWLTDRVD
PRKLLFAYYGLRGLSLIYLPYSDFSLYSLSLFGVFYGLDWIATVPPTLRLTTDAFGERDA
PVVFGWVVAGHQVGAATAAFMAGALRVQLGSYLMPFVVAGATGVAAAFLALRIRRRNDDA
PLALAGEAA