Protein Info for LRK53_RS00110 in Rhodanobacter sp000427505 FW510-R12

Annotation: PA0069 family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 PF04055: Radical_SAM" amino acids 81 to 259 (179 residues), 60.8 bits, see alignment E=9.6e-21

Best Hits

KEGG orthology group: None (inferred from 62% identity to psu:Psesu_0015)

Predicted SEED Role

"Radical SAM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (368 amino acids)

>LRK53_RS00110 PA0069 family radical SAM protein (Rhodanobacter sp000427505 FW510-R12)
MDELPPSSSLPTVRVHKGRGAASNPEGRFESIRHHAEDDGWQSALLDEAAPRPRTEVTEE
RAKSVITRNDSPDIAFEQALNPYRGCEHGCVYCFARPSHGYLNLSPGLDFETKIRAKGNL
AEVLRTELAKSGYSPKPINIGSNTDPYQPIEKKWRLTRAALEVLAECRHPCTLVTKNALV
ERDLDILAEMARANLVQVFVSVNSLDNQLAAKLEPRASAPHRRLKTVAALADAGVPVGVL
VAPIIPALNDRDMEAVLERAHAAGARCAGYTVLRLPWELKALFREWLALHAPQRAEHVMS
LVQQMNGGRDYDSDFRTRMRGQGVFADLLRKRFELACRKHGLGRARELQLDTSRFVPPRK
PSPQGELF