Protein Info for KEDOAH_27295 in Escherichia coli ECRC99

Name: yneE
Annotation: UPF0187 protein YneE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 213 to 249 (37 residues), see Phobius details PF01062: Bestrophin" amino acids 1 to 282 (282 residues), 268.6 bits, see alignment E=3.7e-84

Best Hits

Swiss-Prot: 100% identical to YNEE_ECO57: UPF0187 protein YneE (yneE) from Escherichia coli O157:H7

KEGG orthology group: K08994, putative membrane protein (inferred from 99% identity to eco:b1520)

Predicted SEED Role

"FIG00638206: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>KEDOAH_27295 UPF0187 protein YneE (Escherichia coli ECRC99)
MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSIL
GVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKTTLPDSASVREFARLQIAF
AHCLRMTLRKQPQVEVLAHYLKTEDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDIL
FISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFI
SVLISYTFISLDCLAEELEDPFGTENNDLPLDAICNAIEIDLLQMNDEAEIPAKVLPDRH
YQLT